EULER


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(http://euler-assembler.ucsd.edu/portal/) Tool to generate short-read assembly and facilitate assembly of combined reads of NGS and Sanger sequencing. Sequence fragments are broken down into every possible read of some length k, refered as k-tuples. Graphs are represented as de Bruijn graph. Assembly is achieved by finding an eulerian path in the de Bruijn graph, that is a path which visits every edge exactly once. EULER-SR is a version of EULER optimized to handle short reads. This represents the post efficient approach for error correction of short reads that has been developed thus far. (Edwards 2009)