SNP

TropGeneDB

TropGeneDB is a component of the South Green Bioinformatics Platform for the management of genetic, molecular and phenotypic data on tropical crop species. The most common data stored in TropGeneDB are molecular markers, QTLs (Quantitative Trait Loci), genetic and physical maps, genetic diversity, phenotypic diversity studies, and information on genetic resources (geographic origin, parentage, collection). TropGeneDB is organized on a crop basis with currently nine public modules (banana, cocoa, coconut, coffee, cotton, oil palm, rice, rubber tree, sugarcane).

gene database for tropical plants
Referent(s): 
Chantal Hamelin, Manuel Ruiz
Funding: 

This project is mainly supported by CIRAD core funding.

SNiPlayDB

SNiPlay is a web-based tool for SNP and polymorphism analysis. From sequencing traces, alignment or allelic data given as input, it detects or extracts SNP and insertion/deletion events. In a second step, it sends sequences and allelic data into an integrative pipeline

SNP and polymorphism analysis
Referent(s): 
Alexis Dereeper
Funding: 

ANR DLVitis (2009), ANR GnpAsso (2012)

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