Map

Sugarcane Genome Hub

The Sugarcane Genome Hub is an integrated web-based database providing centralized access to the sugarcane reference genome sequences and genomic resources. Data currently available is the monoploid reference genome sequence obtained from R570 cultivar. This web portal is built using open-source Tripal database infrastructure. It is developed by CIRAD and supported by the South Green Bioinformatics platform.

The Sugarcane Genome Hub is an integrated web-based database providing centralized access to the sugarcane reference genome sequences and genomic resources.
Referent(s): 
Gaëtan Droc

Cassava Genome Hub

the integrated portal for cassava
Referent(s): 
Manuel Ruiz, Alexis Dereeper
Funding: 

Agropolis Fondation (Twin post-doc)

EURoot

EURoot DB is the database of the EURoot project "Enhancing resource uptake from roots under stress in cereal crops

the database on QTLs, genes and mutants involved in root growth under stress of the EURoot project "Enhancing resource uptake from roots under stress in cereal crops"
Referent(s): 
Chantal Hamelin
Funding: 

EU

EURIGEN

The EURIGEN project "Genotyping for the Conservation and Valorization of European Rice Germplasm", is the Action 049 of the AGRI GEN RES program for conservation, characterisation, collection and utilization of genetic resources in agriculture funded by the European Commission - DG Agriculture and Rural Development. 

Eurigen Database manages genetic, phenotypic and genomic information on rice working collections of European institutions
Referent(s): 
Chantal Hamelin
Funding: 

European Commission - DG Agriculture and Rural Development

Cocoa Genome Hub

Access the cocoa Criollo Genome Version 2 with 99% of the genes anchored to the 10 chromosomes

a Web portal for crossing cocoa phenotypic, genetic and genomic data from ICGD and TropGeneDB databases
Referent(s): 
Gaëtan Droc

Banana Genome Hub

The Banana Genome Hub centralises databases of genetic and genomic data for the musa acuminata crop Hub developed by Cirad and Bioversity and supported by the South Green Bioinformatics platform. Data available are the complete genome sequence along with gene structure, gene product information, metabolism, gene families, transcriptomics (ESTs, RNA-Seq), genetic markers (SSR, DArT, SNPs) and genetic maps.

the integrated crop portal for Musa
Funding: 

ANR

TropGeneDB

TropGeneDB is a component of the South Green Bioinformatics Platform for the management of genetic, molecular and phenotypic data on tropical crop species. The most common data stored in TropGeneDB are molecular markers, QTLs (Quantitative Trait Loci), genetic and physical maps, genetic diversity, phenotypic diversity studies, and information on genetic resources (geographic origin, parentage, collection). TropGeneDB is organized on a crop basis with currently nine public modules (banana, cocoa, coconut, coffee, cotton, oil palm, rice, rubber tree, sugarcane).

gene database for tropical plants
Referent(s): 
Chantal Hamelin, Manuel Ruiz
Funding: 

This project is mainly supported by CIRAD core funding.

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