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Book Chapter

Sempéré G, Larmande P, Rouard M. 2022. Managing high-density genotyping data with Gigwa. Plant Bioinformatics. 2443

Droc G, An G, Wu C, Hsing Y-ieC, Hirochika H, Pereira A, Sundaresan V, Han C-D, Upadhyaya N, Ramachandran S et al.. 2013. Mutant Resources for Functional Analysis of the Rice Genome. Genetics and Genomics of Rice. 5:81-115.

Conference Paper

{DO} Q, {LARMANDE} P. Submitted. Candidate gene prioritization using graph embedding. {RIVF}.

Argout X, Ruiz M, Rouard M, Turnbull C, Lanaud C, Rosenquist E, Courtois B. 2007. CocoaGen DB: a Web portal for crossing cocoa phenotypic, genetic and genomic data from ICGD and TropGeneDB databases.. 15th International Cocoa Research Conference. 1:515-518.

Do H, Tran H, Khoat Than Q, Larmande P. Submitted. Comparative study of Named-Entity Recognition methods in the agronomical domain. {CiCling}. Abstract

Risterucci AM, Nansot G, Grangeon R, Lepitre V, Dereeper A, Argout X, Ruiz M, Billotte N. 2008. Development of microsatellite (SSR) markers using the SAT software. 2nd International Symposium on Guava and Other Myrtaceae.

Guignon V, Chauve C, Hamel S. 2005. An edit distance between RNA stem-loops. LECTURE NOTES IN COMPUTER SCIENCE. 3772:335-347. Abstract

Argout X, Ruiz M, Fouet O, Lanaud C, Wincker P, Da Silva C, Courtois B. 2007. ESTtik : a semi-automatic cDNA sequence analysis and annotation pipeline including SSR and SNP search tools.. 15th International Cocoa Research Conference. 1:501-506.

Do H, Than K, Larmande P. Submitted. Evaluating Named-Entity Recognition Approaches in Plant Molecular Biology. Multi-disciplinary Trends in Artificial Intelligence. :219–225. Abstract

Argout X, Fouet O, Wincker P, Gramacho K, Legavre T, Sabau X, Risterucci AM, Da Silva C, Loor G, Cascardo J et al.. 2008. A First Step In The Understanding Of The Cocoa Transcriptome: Analysis Of An Exhaustive Dataset Of ESTs On Theobroma cacao Generated From Various Tissues And Under Various Conditions.. Plant & Animal Genomes XVI Conference.

Seguin M, Argout X, F. D, Espeout-Fois S, Garcia D, Le Guen V, Pujade-Renaud V, Weber C. 2008. GENESALB: Genetic analysis of resistance to South American Leaf Blight –SALB (Microcyclus ulei) in rubber tree (Heveaspp.). Genoplante.

Lanaud C, Argout X, Fouet O, Allegre M, Bocs S, Ruiz M, Kudrna D, Jetty SSA, Wing R, Clément D et al.. 2008. The International Cocoa Genome Sequencing Consortium (ICGS). Plant Genomics European Meeting (PlantGEM).

Lanaud C, Fouet O, Gramacho KP, Argout X, Legavre T, Sabau X, Risterucci AM, Wincker P, Da Silva C, Loor Solorzano RG et al.. 2007. A large EST resource for theobroma cacao L. 15th Plant and Animal Genomes Conference.

Lanaud C, Fouet O, Clement D, Boccara M, Risterucci AM, Legavre T, Surujdeo-Maharaj S, Argout X. 2008. A meta-QTL analysis of disease resistance traits of Theobroma cacao L.. Plant Genomics European Meeting (PlantGEM).

Larmande P, Droc G, Fromentin S, Périn C. 2009. Orylink: A Personalized Integrated System for Functional Genomic Analysis. International Plant and Animal Genome Conference.

Maillol V, Bacilieri R, Bocs S, Boursiquot J-M, Carrier G, Dereeper A, Droc G, Fleury C, Larmande P, Lecunff L et al.. 2012. Role of Galaxy in a bioinformatic plant breeding platform. Galaxy Community Conference.

Hamelin C, Ruiz M, Argout X. 2007. TropGENE-DB, a multi-tropical crop information system. 4th International Workshop DILS.

Conference Proceedings

Monat C, Tranchant-Dubreuil C, Lorieux M, Ghesquière A, Ruiz M, Sabot F. 2014. African Rices Genome Projects : GLASS and Irigin. PAG XXII. Abstract

Montoya C, Cuellar T, Lopes R, Summo M, Bittencourt D, Pinaglia C, Rivallan R, Espeout-Fois S, Pitollat B, Flori A et al.. 2014. Genetic Determinism of the Fatty Acid Composition of Palm Oil in Elaeis (E. guineensis Jacq. and E. oleifera (H.B.K) Cortès) by Genetic Mapping and Differential Expression Analysis of Candidate Genes. PAG XXII.

Lariviere D, Dufayard JF, Bocs S, This D. 2014. Integrative System For Gene Family Gathering and Analysis In A Context of Crops’ Stress Response Study. PAG XXII.

Network SG. 2014. The South Green Bioinformatics platform. PAG XXII. Abstract

Monat C, Tranchant-Dubreuil C, Kougbeadjo A, Farcy C, Ortega-Abboud E, Amanzougarene S, Ravel S, Agbessi M, Orjuela-Bouniol J, Summo M et al.. 2015. TOGGLE: Toolbox for generic NGS analyses. JOBIM.

Bocs S, Dereeper A, Gayraud T, Jamilloux V, Lashermes P, Guyot R. 2014. Transposable Elements in the Robusta Coffee Genome (Coffea canephora). PAG XXII.

Garsmeur O, Droc G, Woltinge D, Van-Oeveren J, Martin G, Harrison B, Charron C, Van Der Vossen E, D’Hont A. 2014. Whole Genome Profiling to Generate a Core Physical Map of the Gene Rich Part of the Sugarcane Genome. PAG XXII. Abstract

Journal Article

L H, J C, EKS C, S J, M P, R W, C A, E A, TZ B, C B et al.. 2018. AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.. Database : the journal of biological databases and curation.