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Jonquet C, Toulet A, Arnaud E, Aubin S, Yeumo ED, Emonet V, Graybeal J, Musen MA, Pommier C, Larmande P. Submitted. Reusing the {NCBO} {BioPortal} technology for agronomy to build {AgroPortal}. 1747

Mieulet D, Diévart A, Droc G, Lanau N, Guiderdoni E. 2013. Reverse genetics in rice using Tos17.. Methods in molecular biology (Clifton, N.J.). 1057:205-21. Abstract

V J, A D, N B, G D, J D, JR M, JP P, L M, L T, J L et al.. Submitted. Rice Galaxy: an open resource for plant science. 8:giz028.

V J, A D, N B, G D, J D, JR M, JP P, L M, L T, J L et al.. Submitted. Rice Galaxy: an open resource for plant science.

Larmande P. 2019. Rice Galaxy: an open resource for plant science. GigaScience.

Courtois B, Ahmadi N, Khowaja F, Price AH, Rami JF, Frouin J, Hamelin C, Ruiz M. 2009. Rice Root Genetic Architecture: Meta-analysis from a Drought QTL Database. Rice. 2(2-3):115-128.

Ventelon-Debout M, Tranchant-Dubreuil C, Nguyen T-T-H, Bangratz M, Siré C, Delseny M, Brugidou C. 2008. Rice yellow mottle virus stress responsive genes from susceptible and tolerant rice genotypes.. BMC plant biology. 8:26.

Cubry P, Tranchant-Dubreuil C, Thuillet A-C, Monat C, Ndjiondjop M-N, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B et al.. Submitted. The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes. 28:2274–2282.e6. Abstract

P C, C T-D, AC T, C M, MN N, K L, C C, S E, N S, B R et al.. 2018. The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.. Current biology : CB.

Rouard M, Carpentier SC, Bocs S, Droc G, Argout X, Roux N, Ruiz M, Pillay M, Ude G, Kole C et al.. 2012. Role of bioinformatics as a tool. Genetics, Genomics, and Breeding of Bananas. :194.

König-Ries B, Walls R, Kattge J, Benbernou S, Sack H, Arnaud E, Mougenot I, Larmande P, Karampiperis P, Todorov K et al.. Submitted. S4BIODIV : Semantic for Biodiversity workshop. 1933

Dereeper A, Argout X, Billot C, Rami JF, Ruiz M. 2007. SAT, a flexible and optimized Web application for SSR marker development. BMC Bioinformatics. 8:465-465. Abstract

Hippolyte I, Bakry F, Seguin M, Gardes L, Rivallan R, Risterucci AM, Jenny C, Perrier X, Carreel F, Argout X et al.. 2010. A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas. BMC Plant Biology. 10(1):65.

Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, Bras YL, Lemoine F et al.. Submitted. Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. 75:284–298. Abstract

Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, Bras YL, Lemoine F et al.. 2017. Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Generation Computer Systems. 75:284-298.

Wollbrett J, Larmande P, Ruiz M. 2012. Semi-automatic generation of Semantic Web Services for relational biological databases. CEUR Workshop Proceedings. 952

Piyatrakul P, Yang M, Putranto R-A, Pirrello J, Dessailly F, Hu S, Summo M, Theeravatanasuk K, Leclercq J, Kuswanhadi et al.. 2014. Sequence and Expression Analyses of Ethylene Response Factors Highly Expressed in Latex Cells from Hevea brasiliensis. PLoS ONE. 9(6):e99367-. Abstract

Piyatrakul P, Yang M, Putranto R-A, Pirrello J, Dessailly F, Hu S, Summo M, Theeravatanasuk K, Leclercq J, Leclercq J et al.. 2014. Sequence and expression analyses of ethylene response factors highly expressed in latex cells from Hevea brasiliensis.. PloS one. 9(6):e99367. Abstract

Wu AG, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J et al.. 2014. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology.

Riahi L, Zoghlami N, Dereeper A, Laucou V, Mliki A, This P. 2013. Single nucleotide polymorphism and haplotype diversity of the gene NAC4 in grapevine. 43:718-724.

Gébelin V, Leclercq J, Leclercq J, Argout X, Chaidamsari T, Hu S, Tang C, Sarah G, Yang M, Montoro P. 2013. The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness.. Tree physiology. 33(10):1084-98. Abstract

Dereeper A, Homa F, Andres G, Sempéré G, Sarah G, Hueber Y, Dufayard JF, Ruiz M. 2015. SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations. Nucleic Acids Research.

Dereeper A, Nicolas S, Le Cunff L, Bacilieri R, Doligez A, Peros J-P, Ruiz M, This P. 2011. SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.. BMC bioinformatics. 12:134. Abstract

Peralta M, Combes M-C, Cenci A, Lashermes P, Dereeper A. 2013. SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species. International Journal of Plant Genomics. 2013 Abstract

Piyatrakul P, Putranto R-A, Martin F, Rio M, Dessailly F, Leclercq J, Dufayard JF, Lardet L, Montoro P. 2012. Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis.. BMC plant biology. 12:244. Abstract