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Miscellaneous

Larmande P, Yeumo ED, Fulss R, Alaux M, Aubin S, Arnaud E, Baumann U, Cooper L, Davey R, Laporte M-A et al.. 2016. Wheat Data Interoperability Guidelines, Ontologies and User Cases. Research Data Alliance.

Journal Article

Terol J, Conesa A, Colmenero JM, Cercos M, Tadeo F, Agusti J, Alos E, Andres F, Soler G, Brumos J et al.. 2007. Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. BMC Genomics. 8:31-31. Abstract

Legeai F, Shigenobu S, Gauthier J-P, Colbourne J, Rispe C, Collin O, Richards S, Wilson ACC, Murphy T, Tagu D. 2010. AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.. Insect molecular biology. 19 Suppl 2:5-12. Abstract

Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes M-C, Gavory F, de Kochko A, Kudrna D et al.. 2013. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.. Plant molecular biology. 83(3):177-89. Abstract

D’Hont A, Denoeud F, Aury J-M, Baurens F-C, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M et al.. 2012. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.. Nature. 488(7410):213-7. Abstract

Pelletier E, Kreimeyer A, Bocs S, Rouy Z, Gyapay G, Chouari R, Rivière D, Ganesan A, Daegelen P, Sghir A et al.. 2008. "Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division.. Journal of bacteriology. 190(7):2572-9. Abstract

Wollbrett J, Larmande P, de Lamotte F, Ruiz M. 2013. Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases.. BMC bioinformatics. 14:126. Abstract

Wollbrett J, Larmande P, de Lamotte F, Ruiz M. 2013. Clever generation of rich {SPARQL} queries from annotated relational schema: application to Semantic Web Service creation for biological databases. {BMC} Bioinformatics. 14:126.

Wollbrett J, Larmande P, de Lamotte F, Ruiz M. Submitted. Clever generation of rich {SPARQL} queries from annotated relational schema: application to Semantic Web Service creation for biological databases. 14:126.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G et al.. 2014. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.. Science (New York, N.Y.). 345(6201):1181-4. Abstract

Yeumo ED, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP, Fulss RA et al.. 2017. Developing data interoperability using standards: A wheat community use case. F1000Research. 6:1843.

Yeumo ED, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP, Fulss RA et al.. Submitted. Developing data interoperability using standards: A wheat community use case. 6:1843.

Larmande P, Yeumo ED, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP et al.. 2017. Developing data interoperability using standards: A wheat community use case [version 2; referees: 2 approved].

van Enckevort LJG, Droc G, Piffanelli P, Greco R, Gagneur C, Weber C, González VM, Cabot P, Fornara F, Berri S et al.. 2005. EU-OSTID: a collection of transposon insertional mutants for functional genomics in rice. Plant molecular biology. 59(1):99-110. Abstract

Wanchana S, Thongjuea S, Ulat VJ, Anacleto M, Mauleon R, Conte MG, Rouard M, Ruiz M, Krishnamurthy N, Sjolander K et al.. 2008. The Generation Challenge Programme comparative plant stress-responsive gene catalogue. Nucleic Acids Research. 36(suppl 1):D943-D946. Abstract

Bruskiewich R, Senger M, Davenport G, Ruiz M, Rouard M, Hazekamp T, Takeya M, Doi K, Satoh K, Costa M et al.. 2008. The generation challenge programme platform: semantic standards and workbench for crop science.. International journal of plant genomics. 2008:369601. Abstract

Argout X, Salse J, Aury J-M, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN et al.. 2011. The genome of Theobroma cacao. Nature Genetics. 43(2):101-108.

Cai J, Liu X, Vanneste K, Proost S, Tsai W-C, Liu K-W, Chen L-J, He Y, Xu Q, Bian C et al.. 2014. The genome sequence of the orchid Phalaenopsis equestris. Nature Genetics. 47(1):65-72.

Amselem J, Cuomo CA, van Kan JAL, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S et al.. 2011. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.. PLoS genetics. 7(8):e1002230. Abstract

Rouard M, Guignon V, Aluome C, Laporte M-A, Droc G, Walde C, Zmasek CM, Périn C, Conte MG. 2010. GreenPhylDB v2.0: comparative and functional genomics in plants. Nucleic Acids Research. Abstract

Rouard M, Guignon V, Aluome C, Laporte M-A, Droc G, Walde C, Zmasek CM, Périn C, Conte MG. 2011. GreenPhylDB v2.0: comparative and functional genomics in plants.. Nucleic acids research. 39(Database issue):D1095-102. Abstract

Wei F-J, Droc G, Guiderdoni E, Hsing Y-IC. 2013. International Consortium of Rice Mutagenesis: resources and beyond.. Rice (New York, N.Y.). 6(1):39. Abstract

Larmande P, Larmande P, Do H, Wang Y. 2019. OryzaGP: rice gene and protein dataset for named-entity recognition. Genomics & Informatics.

König-Ries B, Walls R, Kattge J, Benbernou S, Sack H, Arnaud E, Mougenot I, Larmande P, Karampiperis P, Todorov K et al.. 2017. Preface. CEUR Workshop Proceedings. 1933

Scheben A, Chan C-KK, Mansueto L, Mauleon R, Larmande P, Alexandrov N, Wing RA, {McNally} KL, Quesneville H, Edwards D. Submitted. Progress in single-access information systems for wheat and rice crop improvement. Abstract