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Submitted
Venkatesan A, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, Ruiz M, Larmande P.  Submitted.  Agronomic Linked Data ({AgroLD}): A knowledge-based system to enable integrative biology in agronomy. 13:1–17. Abstract
Nti-Addae Y, Matthews D, Ulat VJ, Syed R, Sempere G, Petel A, Renner J, Larmande P, Guignon V, Jones E et al..  Submitted.  Benchmarking Database Systems for Genomic Selection Implementation. :baz096. Abstract
Wollbrett J, Larmande P, de Lamotte F, Ruiz M.  Submitted.  Clever generation of rich {SPARQL} queries from annotated relational schema: application to Semantic Web Service creation for biological databases. 14:126.
Yeumo ED, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP, Fulss RA et al..  Submitted.  Developing data interoperability using standards: A wheat community use case. 6:1843.
Sempéré G, Philippe F, Dereeper A, Ruiz M, Sarah G, Larmande P.  Submitted.  Gigwa—Genotype investigator for genome-wide analyses. 5:25. Abstract
A S, {CK} C, L M, R M, P L, N A, {RA} W, {KL} {MN}, H Q, D E.  Submitted.  Progress in single-access information systems for wheat and rice crop improvement..
V J, A D, N B, G D, J D, JR M, JP P, L M, L T, J L et al..  Submitted.  Rice Galaxy: an open resource for plant science.
V J, A D, N B, G D, J D, JR M, JP P, L M, L T, J L et al..  Submitted.  Rice Galaxy: an open resource for plant science. 8:giz028.
Cubry P, Tranchant-Dubreuil C, Thuillet A-C, Monat C, Ndjiondjop M-N, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B et al..  Submitted.  The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes. 28:2274–2282.e6. Abstract
Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C et al..  Submitted.  {AgBioData} consortium recommendations for sustainable genomics and genetics databases for agriculture. 2018 Abstract
Zevio S, El Hassouni N, Ruiz M, Larmande P.  Submitted.  {AgroLD} indexing tools with ontological annotations. 1795
Ngompé GT, Venkatesan A, El Hassouni N, Ruiz M, Larmande P.  Submitted.  {AgroLD} {API}. An {API}-centric approach towards knowledge extraction in the agronomic linked data knowledge base,{AgroLD} {API}. Une architecture orientée services pour l?extraction de connaissances dans la base de données liées {AgroLD} 21:133–157.
Abbeloos R, Vasques Costa B, Edwards JD, Papoutsoglou E, Finkers R, Verouden M, Robbins K, Selby P, Glaser P, Sun Q et al..  Submitted.  {BrAPI} - an Application Programming Interface for Plant Breeding Applications. Abstract
2022
Sempéré G, Larmande P, Rouard M.  2022.  Managing high-density genotyping data with Gigwa. Plant Bioinformatics. 2443
2021
Sempéré G, Pétel A, Abbé M, Lefeuvre P, Roumagnac P, Mahé F, Baurens G, Filloux D.  2021.  metaXplor: an interactive viral and microbial metagenomic data manager. GigaScience. 10
2020
Martin G, Cardi C, Sarah G, Ricci S, Jenny C, Fondi E, Perrier X, Glaszmann J-C, D'Hont A, Yahiaoui N.  2020.  Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. The Plant Journal.
2019
V J, A D, N B, G D, J D, JR M, JP P, L M, L T, J L et al..  2019.  Corrigendum to: Rice Galaxy: an open resource for plant science.. GigaScience.
Sempéré G, Pétel A, Rouard M, Frouin J, Hueber Y, de Bellis F, Larmande P.  2019.  Gigwa v2—Extended and improved genotype investigator. GigaScience. 8
Baurens F-C, Martin G, Hervouet C, Salmon F, Yohomé D, Ricci S, Rouard M, Habas R, Lemainque A, Yahiaoui N et al..  2019.  Recombination and large structural variations shape interspecific edible bananas genomes. Molecular biology and evolution. 36:97–111.
Larmande P, Sempéré G, Pétel A, Rouard M, Frouin J, Hueber Y, De Bellis F, Larmande P.  2019.  Gigwa v2—Extended and improved genotype investigator. GigaScience.
2018
Venkatesan A, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, Ruiz M, Larmande P.  2018.  Agronomic Linked Data ({AgroLD}): a Knowledge-based System to Enable Integrative Biology in Agronomy.
A S, CK C, L M, R M, P L, N A, RA W, KL MN, H Q, D E.  2018.  Progress in single-access information systems for wheat and rice crop improvement.. Briefings in bioinformatics.
L H, J C, EKS C, S J, M P, R W, C A, E A, TZ B, C B et al..  2018.  AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.. Database : the journal of biological databases and curation.
Larmande P, Venkatesan A, Zhang L, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, Ruiz M, Larmande P.  2018.  Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PLOS ONE.
Larmande P, Alexis D, Beth P, Gabriel Z, Gaetan D, Jan LE, Jason H, Jillian L, John MR, Jon PP et al..  2018.  Supporting data for {"}Rice Galaxy: an open resource for plant science{"}. GigaScience Database.