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Submitted
Nti-Addae Y, Matthews D, Ulat VJ, Syed R, Sempere G, Petel A, Renner J, Larmande P, Guignon V, Jones E et al..  Submitted.  Benchmarking Database Systems for Genomic Selection Implementation. :baz096. Abstract
Do H, Than K, Larmande P.  Submitted.  Evaluating Named-Entity Recognition Approaches in Plant Molecular Biology. Multi-disciplinary Trends in Artificial Intelligence. :219–225. Abstract
Guilhem S, Adrien P, Mathieu R, Julien F, Yann H, Fabien DB, Pierre L.  Submitted.  Gigwa v2 – Extended and improved genotype investigator. 8:giz051.
Scheben A, Chan C-KK, Mansueto L, Mauleon R, Larmande P, Alexandrov N, Wing RA, {McNally} KL, Quesneville H, Edwards D.  Submitted.  Progress in single-access information systems for wheat and rice crop improvement. Abstract
Jonquet C, Toulet A, Arnaud E, Aubin S, Yeumo ED, Emonet V, Graybeal J, Musen MA, Pommier C, Larmande P.  Submitted.  Reusing the {NCBO} {BioPortal} technology for agronomy to build {AgroPortal}. 1747
Cubry P, Tranchant-Dubreuil C, Thuillet A-C, Monat C, Ndjiondjop M-N, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B et al..  Submitted.  The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes. 28:2274–2282.e6. Abstract
König-Ries B, Walls R, Kattge J, Benbernou S, Sack H, Arnaud E, Mougenot I, Larmande P, Karampiperis P, Todorov K et al..  Submitted.  S4BIODIV : Semantic for Biodiversity workshop. 1933
Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, Bras YL, Lemoine F et al..  Submitted.  Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. 75:284–298. Abstract
Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C et al..  Submitted.  {AgBioData} consortium recommendations for sustainable genomics and genetics databases for agriculture. 2018 Abstract
Jonquet C, Toulet A, Arnaud E, Aubin S, Yeumo ED, Emonet V, Graybeal J, Laporte M-A, Musen MA, Pesce V et al..  Submitted.  {AgroPortal}: A vocabulary and ontology repository for agronomy. 144:126–143. Abstract
Abbeloos R, Vasques Costa B, Edwards JD, Papoutsoglou E, Finkers R, Verouden M, Robbins K, Selby P, Glaser P, Sun Q et al..  Submitted.  {BrAPI} - an Application Programming Interface for Plant Breeding Applications. Abstract
2021
Sempéré G, Pétel A, Abbé M, Lefeuvre P, Roumagnac P, Mahé F, Baurens G, Filloux D.  2021.  metaXplor: an interactive viral and microbial metagenomic data manager. GigaScience. 10
2020
Martin G, Cardi C, Sarah G, Ricci S, Jenny C, Fondi E, Perrier X, Glaszmann J-C, D'Hont A, Yahiaoui N.  2020.  Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. The Plant Journal.
2019
Baurens F-C, Martin G, Hervouet C, Salmon F, Yohomé D, Ricci S, Rouard M, Habas R, Lemainque A, Yahiaoui N et al..  2019.  Recombination and large structural variations shape interspecific edible bananas genomes. Molecular biology and evolution. 36:97–111.
Larmande P, Adrien P, Fabien DB, Guilhem S, Julien F, Mathieu R, Pierre L, Yann H.  2019.  Supporting data for {"}Gigwa v2 – Extended and improved genotype investigator{"}. GigaScience Database.
2018
Garsmeur O, Droc G, Antonise R, Grimwood J, Potier B, Aitken K, Jenkins J, Martin G, Charron C, Hervouet C et al..  2018.  A mosaic monoploid reference sequence for the highly complex genome of sugarcane.. Nature communications. 9(1):2638. Abstract
P C, C T-D, AC T, C M, MN N, K L, C C, S E, N S, B R et al..  2018.  The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.. Current biology : CB.
L H, J C, EKS C, S J, M P, R W, C A, E A, TZ B, C B et al..  2018.  AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.. Database : the journal of biological databases and curation.
Jonquet C, Toulet A, Arnaud E, Aubin S, Dzalé Yeumo E, Emonet V, Graybeal J, Laporte M-A, Musen MA, Pesce V et al..  2018.  AgroPortal: A vocabulary and ontology repository for agronomy. Computers and Electronics in Agriculture. 144:126-143.
Larmande P, Alexis D, Beth P, Gabriel Z, Gaetan D, Jan LE, Jason H, Jillian L, John MR, Jon PP et al..  2018.  Supporting data for {"}Rice Galaxy: an open resource for plant science{"}. GigaScience Database.
2017
Argout X, Martin G, Droc G, Fouet O, Labadie K, Rivals E, Aury JM, Lanaud C.  2017.  The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies.. BMC genomics. 18(1):730. Abstract
Ruas M, Guignon V, Sempere G, Sardos J, Hueber Y, Duvergey H, Andrieu A, Chase R, Jenny C, Hazekamp T et al..  2017.  MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. Database. 2017(1)
König-Ries B, Walls R, Kattge J, Benbernou S, Sack H, Arnaud E, Mougenot I, Larmande P, Karampiperis P, Todorov K et al..  2017.  Preface. CEUR Workshop Proceedings. 1933
Larmande P, Larmande P, Meera S, Mauleon R.  2017.  Rice data interoperability working group updates. F1000Research.
Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, Bras YL, Lemoine F et al..  2017.  Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Generation Computer Systems. 75:284-298.