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Submitted
Yeumo ED, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP, Fulss RA et al..  Submitted.  Developing data interoperability using standards: A wheat community use case. 6:1843.
V J, A D, N B, G D, J D, JR M, JP P, L M, L T, J L et al..  Submitted.  Rice Galaxy: an open resource for plant science.
V J, A D, N B, G D, J D, JR M, JP P, L M, L T, J L et al..  Submitted.  Rice Galaxy: an open resource for plant science. 8:giz028.
Cubry P, Tranchant-Dubreuil C, Thuillet A-C, Monat C, Ndjiondjop M-N, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B et al..  Submitted.  The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes. 28:2274–2282.e6. Abstract
König-Ries B, Walls R, Kattge J, Benbernou S, Sack H, Arnaud E, Mougenot I, Larmande P, Karampiperis P, Todorov K et al..  Submitted.  S4BIODIV : Semantic for Biodiversity workshop. 1933
Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, Bras YL, Lemoine F et al..  Submitted.  Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. 75:284–298. Abstract
Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C et al..  Submitted.  {AgBioData} consortium recommendations for sustainable genomics and genetics databases for agriculture. 2018 Abstract
Abbeloos R, Vasques Costa B, Edwards JD, Papoutsoglou E, Finkers R, Verouden M, Robbins K, Selby P, Glaser P, Sun Q et al..  Submitted.  {BrAPI} - an Application Programming Interface for Plant Breeding Applications. Abstract
B G, {NQ} H, D P, A B, K C, P T, P L, A D.  Submitted.  {COMOKIT}: A Modeling Kit to Understand, Analyze, and Compare the Impacts of Mitigation Policies Against the {COVID}-19 Epidemic at the Scale of a City..
2021
Sempéré G, Pétel A, Abbé M, Lefeuvre P, Roumagnac P, Mahé F, Baurens G, Filloux D.  2021.  metaXplor: an interactive viral and microbial metagenomic data manager. GigaScience. 10
2020
Do QH, Bich HH, Larmande P.  2020.  {PyRice}: a Python package for querying Oryza Sativa databases.
B G, NQ H, D P, A B, K C, P T, P L, A D.  2020.  COMOKIT: A Modeling Kit to Understand, Analyze, and Compare the Impacts of Mitigation Policies Against the COVID-19 Epidemic at the Scale of a City.. Frontiers in public health.
2019
V J, A D, N B, G D, J D, JR M, JP P, L M, L T, J L et al..  2019.  Corrigendum to: Rice Galaxy: an open resource for plant science.. GigaScience.
Sempéré G, Pétel A, Rouard M, Frouin J, Hueber Y, de Bellis F, Larmande P.  2019.  Gigwa v2—Extended and improved genotype investigator. GigaScience. 8
Baurens F-C, Martin G, Hervouet C, Salmon F, Yohomé D, Ricci S, Rouard M, Habas R, Lemainque A, Yahiaoui N et al..  2019.  Recombination and large structural variations shape interspecific edible bananas genomes. Molecular biology and evolution. 36:97–111.
2018
Garsmeur O, Droc G, Antonise R, Grimwood J, Potier B, Aitken K, Jenkins J, Martin G, Charron C, Hervouet C et al..  2018.  A mosaic monoploid reference sequence for the highly complex genome of sugarcane.. Nature communications. 9(1):2638. Abstract
P C, C T-D, AC T, C M, MN N, K L, C C, S E, N S, B R et al..  2018.  The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.. Current biology : CB.
L H, J C, EKS C, S J, M P, R W, C A, E A, TZ B, C B et al..  2018.  AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.. Database : the journal of biological databases and curation.
Larmande P, Alexis D, Beth P, Gabriel Z, Gaetan D, Jan LE, Jason H, Jillian L, John MR, Jon PP et al..  2018.  Supporting data for {"}Rice Galaxy: an open resource for plant science{"}. GigaScience Database.
2017
Yeumo ED, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP, Fulss RA et al..  2017.  Developing data interoperability using standards: A wheat community use case. F1000Research. 6:1843.
Larmande P, Yeumo ED, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP et al..  2017.  Developing data interoperability using standards: A wheat community use case [version 2; referees: 2 approved].
König-Ries B, Walls R, Kattge J, Benbernou S, Sack H, Arnaud E, Mougenot I, Larmande P, Karampiperis P, Todorov K et al..  2017.  Preface. CEUR Workshop Proceedings. 1933
Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, Bras YL, Lemoine F et al..  2017.  Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Generation Computer Systems. 75:284-298.
2016
Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N et al..  2016.  A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.. Molecular ecology resources. Abstract
Nicolas SD, Péros J-P, Lacombe T, Launay A, Le Paslier M-C, Bérard A, Mangin B, Valière S, Martins F, Le Cunff L et al..  2016.  Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC plant biology. 16:74.