South Green Publications
2016
Petitot A-, Dereeper A, Agbessi M, Da Silva C, Guy J, Ardisson M, et al. Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants. Molecular plant pathology. 2016;17:860-74.
Luyen LN, Tireau A, Venkatesan A, Neveu P, Larmande P. Development of a knowledge system for big data: Case study to plant phenotyping data. ACM International Conference Proceeding Series. 2016;13-15-June-2016.
Guignon V, Hueber Y, Rouard M, Bocs S, Couvin D, de Lamotte F, et al. The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology. 2016;7:6-9.
Zevio S, El Hassouni N, Ruiz M, Larmande P. AgroLD indexing tools with ontological annotations. CEUR Workshop Proceedings. 2016;1795.
Mieulet D, Jolivet S, Rivard M, Cromer L, Vernet A, Mayonove P, et al. Turning rice meiosis into mitosis. Cell Research. 2016.
Martin G, Baurens F-, Droc G, Rouard M, Cenci A, Kilian A, et al. Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods. BMC genomics. 2016;17:243.
Ngompé GT, Venkatesan A, El Hassouni N, Ruiz M, Larmande P. AgroLD API. An API-centric approach towards knowledge extraction in the agronomic linked data knowledge base,AgroLD API. Une architecture orientée services pour l?extraction de connaissances dans la base de données liées AgroLD. Ingenierie des Systemes d{'}Information. 2016;21:133-57.
Fischer I, Diévart A, Droc G, Dufayard JF, Chantret N. Evolutionary dynamics of the Leucine-Rich Repeats Receptor-Like Kinase (LRR-RLK) subfamily in angiosperms. Plant physiology. 2016:pp–01470.
Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, et al. Evolutionary forces affecting synonymous variations in plant genomes. bioRxiv. 2016:086231.
2015
Lartaud M, Perin C, Courtois B, Thomas E, Henry S, Bettembourg M, et al. PHIV-RootCell: a supervised image analysis tool for rice root anatomical parameter quantification. Frontiers in Plant Science. 2015;5.
Monat C, Tranchant-Dubreuil C, Kougbeadjo A, Farcy C, Ortega-Abboud E, Amanzougarene S, et al. TOGGLE: toolbox for generic NGS analyses. BMC Bioinformatics. 2015;16:374. Abstract
Dereeper A, Homa F, Andres G, Sempéré G, Sarah G, Hueber Y, et al. SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations. Nucleic Acids Research. 2015.
Venkatesan A, El Hassouni N, Phillipe F, Pommier C, Quesneville H, Ruiz M, et al. Exposing French agronomic resources as Linked Open Data. CEUR Workshop Proceedings. 2015;1546:205-7.
2014
Cotta MG, Barros LM, de Almeida JD, de Lamotte F, Barbosa EA, Vieira NG, et al. Lipid transfer proteins in coffee: isolation of Coffea orthologs, Coffea arabica homeologs, expression during coffee fruit development and promoter analysis in transgenic tobacco plants. Plant Mol Biol. 2014;85(1-2):11-31. Abstract
Fischer I, Dainat J, Ranwez V, Glémin S, Dufayard JF, Chantret N. Impact of recurrent gene duplication on adaptation of plant genomes. BMC Plant Biol. 2014;14:151. Abstract
Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Chérif E, Ballardini M, Abdoulkader S, et al. In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability. Applications in plant sciences. 2014;2. Abstract
Piyatrakul P, Yang M, Putranto R-, Pirrello J, Dessailly F, Hu S, et al. Sequence and Expression Analyses of Ethylene Response Factors Highly Expressed in Latex Cells from Hevea brasiliensis. PLoS ONE. 2014;9(6):e99367-. Abstract
Wu AG, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, et al. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology. 2014.
Cai J, Liu X, Vanneste K, Proost S, Tsai W-, Liu K-, et al. The genome sequence of the orchid Phalaenopsis equestris. Nature Genetics. 2014;47(1):65-72.